SymPortal

a novel analytical framework and platform for coral algal symbiont NGS ITS2 profiling

Community driven

Improved resolution with greater use

Database integrated

Standardisation-enforced central repository

ITS2 type profiling

Sequence-based putative taxa prediction

DataExplorer

Launch SymPortal's DataExplorer to interact with published data sets

pic01

Submit data

To submit your data and run it against the remote database, please contact:

Learn more
pic02

Run locally

You can run the SymPortal analysis locally using your own machine and your own database.

SymPortal Local

Resources

Resource Description Upload date Link
DIV_fasta Fasta file containing all ITS2 sequences found in the published studies listed below of run type remote that have been used as defining intragenomic variants (DIVs; used in the definition of at least one ITS2 Type Profile). This file does not contain sequences unique to data sets held in the SymPortal database that are unpublished. 3360 sequences from 4 published studies. 08 Sept. 2019
Download
all_seqs_fasta_post_MED Fasta file containing all ITS2 sequences found in the published studies listed below of run type remote after having been through the SymPortal quality control pipeline and undergoing minimum entropy decomposition on a sample by sample basis. This file does not contain sequences unique to data sets held in the SymPortal database that are unpublished. 6126 sequences from 4 published studies. 08 Sept. 2019
Download

Interested in a published resource that's not listed? Get in touch!

Published articles using SymPortal

Article Title Location #Samples Additional markers Run type Article Data DataExplorer
Hume et al. 2019a SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling Persian/Arabian Gulf 42 psbAncr remote
Article
Data
Camp et al. 2019 Mangrove lagoons of the Great Barrier Reef support coral populations persisting under extreme environmental conditions GBR 28 -- remote
Article
Data
Gardener et al. 2019 Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave Seychelles 48 -- remote
Article
Data
Klein et al. 2019 Night-time temperature reprieves enhance the thermal tolerance of a symbiotic Cnidarian Red Sea 52 -- local&remote
Article
Data
Terraneo et al. 2019 Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals Red Sea 80 -- remote
Article
Data
Hume et al. 2020 Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations Red Sea 604 -- remote
Article
Data
Damjanovic et al. 2019a Bacterial and algal symbiont dynamics in early recruits exposed to two adult coral species GBR 90 -- remote
Article
Data
Damjanovic et al. 2019b Mixed-mode bacterial transmission in the common brooding coral Pocillopora acuta GBR 71 -- remote
Article
Data
camp_2020_coral_reefs Corals exhibit distinct patterns of microbial reorganisation to thrive in an extreme inshore environment New Caledonia 24 -- remote
Article
Data
howells_2020_mol_ecol Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility Persian/Arabian Gulf 373 -- remote
Article
Data

Do you have an article to add? Do you have additional information about an existing article? Get in touch!

Your unpublished analyses

No unpublished analyses to load

Please cite us

If you use the SymPortal analysis or make use of any of the SymPortal resources above, please cite us:

Hume, Benjamin CC, Edward G. Smith, Maren Ziegler, Hugh JM Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, and Christian R. Voolstra. "SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling." Molecular ecology resources 19;1063-1080 (2019).