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Resources
Resource	Description	Link
Pre-MED sequences	Fasta file containing sequences from published samples that have been through the SymPortal quality control pipeline but have not yet been through Minimum Entropy Decomposition. 3,591,132 sequences. Last updated: 2024-02-13.	Download
Post-MED sequences	Fasta file containing sequences from published samples that have been through the SymPortal quality control pipeline and Minimum Entropy Decomposition. 72,040 sequences. Last updated: 2024-02-13.	Download
Defining Intragenomic Variants (DIVs)	Fasta file containing sequences from the SymPortal database that have a name associated to them. These sequences represent either sequences that the SymPortal database was seeded with when it was first created (see associated MS for more details), or sequences that have been used to define an ITS2 type profile (i.e. Defining Intragenomic [Seqeunce] Variant; DIVs). Fasta contains 5,524 sequences. Last updated: 2024-02-13.	Download

Published articles using SymPortal
Article	Title	Location	#Samples	Additional markers	Run type	Article	Data
Terraneo_et_al_2019	Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals	Red Sea	80	--	remote	Article	Data
Hume_et_al_2020	Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations	Red Sea	604	--	remote	Article	Data
Smith_et_al_2020	Low Symbiodiniaceae diversity in a turbid marginal reef environment	Singapore	447	psbA^ncr	remote	Article	--
Damjanovic_et_al_2019b	Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta	GBR	71	--	remote	Article	Data
Damjanovic_et_al_2019a	Bacterial and algal symbiont dynamics in early recruits exposed to two adult coral species	GBR	90	--	remote	Article	Data
Howells_et_al_2020	Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility	Persian/Arabian Gulf	373	--	remote	Article	Data
Hume_et_al_2019	SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling	Persian/Arabian Gulf	42	psbA^ncr	remote	Article	Data
Camp_et_al_2019	Mangrove lagoons of the Great Barrier Reef support coral populations persisting under extreme environmental conditions	GBR	28	--	remote	Article	--
Klein_et_al_2019	Night-time temperature reprieves enhance the thermal tolerance of a symbiotic cnidarian	Red Sea	52	--	local&remote	Article	Data
tara_non_corals	Tara Pacific ITS2 Symbiodiniaceae data	Tara Pacific Expedition	584	--	remote	Article	Data
Lee_et_al_2022	Molecular diversity and assemblages of coral symbionts (Symbiodiniaceae) in diverse scleractinian coral species	South China Sea	64	None	remote	Article	--
Dungan_et_al_2022	Lack of evidence for the oxidative stress theory of bleaching in the sea anemone, Exaiptasia diaphana, under elevated temperature	GBR	51	--	remote	Article	--
Camp_et_al_2020	Corals exhibit distinct patterns of microbial reorganisation to thrive in an extreme inshore environment	New Caledonia	24	--	remote	Article	Data
Porro_et_al_2019	The many faced symbiotic snakelocks anemone (Anemonia viridis, Anthozoa): host and symbiont genetic differentiation among colour morphs.	English Channel / France	0	None	remote	Article	--
Eckert_et_al_2020	Depth influences Symbiodiniaceae associations among Montastraea cavernosa corals on the Belize Barrier Reef	Belize	241	None	remote	Article	Data
Voolstra_et_al_2020	Standardized short‐term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites	Red Sea	98	None	remote	Article	Data
Butler_et_al_2023	Formal recognition of host-generalist species of dinoflagellate (Cladocopium, Symbiodiniaceae) mutualistic with Indo-Pacific reef corals	Indo-Pacific	4	psbA^ncr	remote	Article	--
Casariego_et_al_2020	Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis	None	30	None	remote	Article	Data
Rouze_et_al_2021	Symbiotic associations of the deepest recorded photosynthetic scleractinian coral (172 m depth)	--	6	--	remote	Article	Data
Nitschke_et_al_2020	Unlocking the phylogenetic diversity, primary habitats, and abundances of free‐living Symbiodiniaceae on a coral reef	--	24	--	remote	Article	Data
Ziegler_et_al_2017	Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula	Red Sea/PAG	891	None	remote	Article	Data
Kriefall_et_al_2022	Reef environments shape microbial partners in a highly connected coral population	French Polynesia	96	None	remote	Article	Data
Shantz_et_al_2022	Positive interactions between corals and damselfish increase coral resistance to temperature stress	French Polynesia	18	None	remote	Article	Data
Alderdice_et_al_2022	Deoxygenation lowers the thermal threshold of coral bleaching	Bali	8	None	remote	Article	Data
Doering_et_al_2023	Comparing the Role of ROS and RNS in the Thermal Stress Response of Two Cnidarian Models, Exaiptasia diaphana and Galaxea fascicularis	GBR	87	None	remote	Article	Data
Maire_et_al_2023_part_one	Assessing the contribution of bacteria to the heat tolerance of experimentally evolved coral photosymbionts	None	37	None	remote	Article	--
Leinbach_et_al_2023	Reef habitats structure symbiotic microalgal assemblages in corals and contribute to differential heat stress responses	French Polynesia	189	None	remote	Article	Data
202108_redsea_coral_microhabitats	Resolving Symbiodiniaceae diversity across coral microhabitats and reef niches	Red Sea	135	None	remote	--	--
Humanes_Lachs_et_al_2022	Within population variability in coral heat tolerance indicates climate adaptation potential	Palau	97	None	remote	--	Data
Bove_et_al_2023	Exposure to global change and microplastics elicits an immune response in an endangered coral	None	36	None	remote	Article	Data
Maire_et_al_2023_part_two	Assessing the contribution of bacteria to the heat tolerance of experimentally evolved coral photosymbionts	None	52	None	remote	Article	--
LaJeunesse_et_al_2022	Mutualistic dinoflagellates with big disparities in ribosomal DNA variation may confound estimates of symbiont diversity and ecology in the jellyfish Cotylorhiza tuberculata	Mediterranean Sea	24	None	remote	Article	--
Marhoefer_et_al_2021	Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis	GBR	175	None	remote	Article	Data
Martinez_et_al_2021	Selection of mesophotic habitats by Oculina patagonica in the Eastern Mediterranean Sea following global warming	Mediterranean Sea	18	None	remote	Article	Data
Indergard_et_al_2022	Acclimation to elevated temperatures in Acropora cervicornis: effects of host genotype and symbiont shuffling	CRF Tavernier	54	None	remote	Article	--
Haydon_et_al_2023	Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance	GBR	40	None	remote	Article	Data
Haydon_et_al_2021	Rapid shifts in bacterial communities and homogeneity of Symbiodiniaceae in colonies of Pocillopora acuta transplanted between reef and mangrove environments	GBR	33	None	remote	Article	Data
Terraneo_et_al_2023	From the shallow to the mesophotic: a characterization of Symbiodiniaceae diversity in the Red Sea NEOM region	Red Sea	50	None	remote	Article	Data
Lachs_et_al_2023	No apparent trade-offs associated with heat tolerance in a reef-building coral	Palau	51	None	remote	Article	Data
Fifer_et_al_2020_part_one	Microbiome structuring within a coral colony and along a sedimentation gradient	Guam	71	None	remote	Article	Data
Fifer_et_al_2020_part_two	Microbiome structuring within a coral colony and along a sedimentation gradient	Guam	58	None	remote	Article	Data
20220419_GuamWild_bentlage	Photosystem regulation in coral-associated dinoflagellates (Symbiodiniaceae) is the primary mode for seasonal acclimation	Guam	91	None	remote	Article	--
Sturm_et_al_2022	Depth-dependent genetic structuring of a depth-generalist coral and its Symbiodiniaceae algal communities at Campeche Bank, Mexico	Gulf of Mexico	124	None	remote	Article	Data
Rossbach_Hume_et_al_2021	Flexibility in Red Sea Tridacna maxima‐Symbiodiniaceae associations supports environmental niche adaptation	Red Sea	50	--	remote	Article	Data
Puntin_et_al_2023	The reef-building coral Galaxea fascicularis: a new model system for coral symbiosis research	Red Sea, Hong Kong	29	None	remote	Article	--
tara_negatives	Tara Pacific ITS2 Symbiodiniaceae data	Tara Pacific Expedition	143	--	remote	Article	Data
tara_coral	Tara Pacific ITS2 Symbiodiniaceae data	Tara Pacific Expedition	2583	--	remote	Article	Data
Liberman_et_al_2022	Octocorals in the Gulf of Aqaba exhibit high photosymbiont fidelity	Gulf of Aqaba	51	cp23S	remote	Article	Data
Grima_et_al_2022	Species-specific elementomes for scleractinian coral hosts and their associated Symbiodiniaceae	GBR	66	None	remote	Article	--
Jacobs_et_al_2021	A phylogenomic examination of Palmyra Atoll’s corallimorpharian invader	Palmyra	4	None	remote	Article	--
Jiang_et_al_2021	Plasticity of symbiont acquisition in new recruits of the massive coral Platygyra daedalea under ocean warming and acidification	Luhuitou fringing reef	25	None	remote	Article	Data
de_Souza_et_al_2023	Importance of depth and temperature variability as drivers of coral symbiont composition despite a mass bleaching event	Hawaii	276	None	remote	Article	--
Nunez-Pons_et_al_2023	Hawaiian coral holobionts reveal algal and prokaryotic host specificity, intraspecific variability in bleaching resistance, and common interspecific microbial consortia modulating thermal stress responses	Hawaii	352	None	remote	Article	Data
Scharfenstein_et_al_2022	Evidence for de novo acquisition of microalgal symbionts by bleached adult corals	Australia	96	None	remote	Article	Data
Lewis_et_al_2022	Colony self-shading facilitates Symbiodiniaceae cohabitation in a South Pacific coral community	Cook Islands	248	psbA^ncr	remote	Article	Data
Gardner_et_al_2019	Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave	Seychelles	52	--	remote	Article	Data
202108_redsea_environmental_niches	Resolving Symbiodiniaceae diversity across coral microhabitats and reef niches	Red Sea	102	None	remote	--	--
20211012_deore	Unique photosynthetic strategies employed by closely related Breviolum minutum strains under rapid short-term cumulative heat stress	None	37	None	remote	Article	Data
20220627_deore	Unique photosynthetic strategies employed by closely related Breviolum minutum strains under rapid short-term cumulative heat stress	None	12	None	remote	Article	Data
20210331_eckert	Cryptic diversity of shallow and mesophotic Stephanocoenia intersepta corals across Florida Keys National Marine Sanctuary	Florida Keys / National Marine Sanctuary	219	None	remote	Article	Data
202402_afiesinger_UAE_GS_10yearcomp	Symbiodiniaceae restructuring over the last decade on the hottest coral reefs on Earth	None	570	None	remote	--	--
202307_afiesinger_UAE_GS	Symbiodiniaceae restructuring over the last decade on the hottest coral reefs on Earth	None	198	None	remote	--	--
20220324_marquez	Symbiodiniaceae diversity in Pocillopora corals in different environments of the Colombian Eastern Pacific: symbiont specificity in spite of coral-host flexibility	Colombian Eastern Pacific	243	None	remote	Article	Data

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