Improved resolution with greater use
Standardisation-enforced central repository
ITS2 type profiling
Sequence-based putative taxa prediction
|DIV_fasta||Fasta file containing all ITS2 sequences found in the published studies listed below of run type remote that have been used as defining intragenomic variants (DIVs; used in the definition of at least one ITS2 Type Profile). This file does not contain sequences unique to data sets held in the SymPortal database that are unpublished. 3360 sequences from 4 published studies.||08 Sept. 2019||
|all_seqs_fasta_post_MED||Fasta file containing all ITS2 sequences found in the published studies listed below of run type remote after having been through the SymPortal quality control pipeline and undergoing minimum entropy decomposition on a sample by sample basis. This file does not contain sequences unique to data sets held in the SymPortal database that are unpublished. 6126 sequences from 4 published studies.||08 Sept. 2019||
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|Article||Title||Location||#Samples||Additional markers||Run type||Article URL||Seq data URL|
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If you use the SymPortal analysis or make use of any of the SymPortal resources above, please cite us:
Hume, Benjamin CC, Edward G. Smith, Maren Ziegler, Hugh JM Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, and Christian R. Voolstra. "SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling." Molecular ecology resources 19;1063-1080 (2019).