SymPortal

a novel analytical framework and platform for coral algal symbiont NGS ITS2 profiling

Community driven

Improved resolution with greater use

Database integrated

Standardisation-enforced central repository

ITS2 type profiling

Sequence-based putative taxa prediction

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Submit data

To submit your data and run it against the remote database, please contact:

Learn more
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Run locally

You can run the SymPortal analysis locally using your own machine and your own database.

SymPortal Local

Resources

Resource Description Upload date Link
DIV_fasta Fasta file containing all ITS2 sequences found in the published studies listed below of run type remote that have been used as defining intragenomic variants (DIVs; used in the definition of at least one ITS2 Type Profile). This file does not contain sequences unique to data sets held in the SymPortal database that are unpublished. 3360 sequences from 4 published studies. 08 Sept. 2019
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all_seqs_fasta_post_MED Fasta file containing all ITS2 sequences found in the published studies listed below of run type remote after having been through the SymPortal quality control pipeline and undergoing minimum entropy decomposition on a sample by sample basis. This file does not contain sequences unique to data sets held in the SymPortal database that are unpublished. 6126 sequences from 4 published studies. 08 Sept. 2019
Download

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Published articles using SymPortal

Article Title Location #Samples Additional markers Run type Article URL Seq data URL

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Please cite us

If you use the SymPortal analysis or make use of any of the SymPortal resources above, please cite us:

Hume, Benjamin CC, Edward G. Smith, Maren Ziegler, Hugh JM Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, and Christian R. Voolstra. "SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling." Molecular ecology resources 19;1063-1080 (2019).