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Resources
Resource	Description	Link
published pre-MED sequences	Fasta file containing sequences from published samples that have been through the SymPortal quality control pipeline but have not yet been through Minimum Entropy Decomposition. 279995 sequences, from 3221 samples, from 20 published studies. Last updated: 2021-11-08	Download
published post-MED sequences	Fasta file containing sequences from published samples that have been through the SymPortal quality control pipeline and Minimum Entropy Decomposition. 8409 sequences, from 3221 samples, from 20 published studies. Last updated: 2021-11-08	Download
published named sequences	Fasta file containing sequences from the SymPortal database that have a name associated to them. These sequences represent either sequences that the SymPortal database was seeded with when it was first created (see associated MS for more details), or sequences that have been used to define an ITS2 type profile (i.e. Defining Intragenomic [Seqeunce] Variant; DIVs) in a published study. Named sequences held in the SymPortal database that are only found in unpublished datasets are not included in this fasta file. Fasta contains 2564 published sequences, from 3221 samples, from 20 published studies. 1722 named but unpublished sequences were withheld from this release. Last updated: 2021-11-08	Download

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Published articles using SymPortal
Article	Title	Location	#Samples	Additional markers	Run type	Article	Data
Terraneo_et_al_2019	Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals	Red Sea	80	--	remote	Article	Data
Gardener_et_al_2019	Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave	Seychelles	52	--	remote	Article	Data
Hume_et_al_2020	Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations	Red Sea	604	--	remote	Article	Data
Smith_et_al_2020	Low Symbiodiniaceae diversity in a turbid marginal reef environment	Singapore	447	psbA^ncr	remote	Article	--
Damjanovic_et_al_2019b	Mixed‐mode bacterial transmission in the common brooding coral Pocillopora acuta	GBR	71	--	remote	Article	Data
Damjanovic_et_al_2019a	Bacterial and algal symbiont dynamics in early recruits exposed to two adult coral species	GBR	90	--	remote	Article	Data
Howells_et_al_2020	Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility	Persian/Arabian Gulf	373	--	remote	Article	Data
Hume_et_al_2019	SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling	Persian/Arabian Gulf	42	psbA^ncr	remote	Article	Data
Camp_et_al_2019	Mangrove lagoons of the Great Barrier Reef support coral populations persisting under extreme environmental conditions	GBR	28	--	remote	Article	--
Klein_et_al_2019	Night-time temperature reprieves enhance the thermal tolerance of a symbiotic cnidarian	Red Sea	52	--	local&remote	Article	Data
Rossbach_Hume_et_al_2021	Flexibility in Red Sea Tridacna maxima‐Symbiodiniaceae associations supports environmental niche adaptation	--	50	--	remote	Article	Data
Camp_et_al_2020	Corals exhibit distinct patterns of microbial reorganisation to thrive in an extreme inshore environment	New Caledonia	24	--	remote	Article	Data
Porro_et_al_2019	The many faced symbiotic snakelocks anemone (Anemonia viridis, Anthozoa): host and symbiont genetic differentiation among colour morphs.	English Channel / France	0	None	remote	Article	--
Eckert_et_al_2020	Depth influences Symbiodiniaceae associations among Montastraea cavernosa corals on the Belize Barrier Reef	Belize	241	None	remote	Article	Data
Voolstra_et_al_2020	Standardized short‐term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites	Red Sea	98	None	remote	Article	Data
Casariego_et_al_2020	Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis	None	30	None	remote	Article	Data
Rouze_et_al_2021	Symbiotic associations of the deepest recorded photosynthetic scleractinian coral (172 m depth)	--	6	--	remote	Article	Data
Nitschke_et_al_2020	Unlocking the phylogenetic diversity, primary habitats, and abundances of free‐living Symbiodiniaceae on a coral reef	--	24	--	remote	Article	Data
Ziegler_et_al_2017	Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula	Red Sea/PAG	891	None	remote	Article	Data
20210521_bellworthy	Selection of mesophotic habitats by Oculina patagonica in the Eastern Mediterranean Sea following global warming	None	18	None	remote	Article	Data
Humanes_Lachs_et_al_2022	Within population variability in coral heat tolerance indicates climate adaptation potential	Palau	97	None	remote	--	Data
20220419_GuamWild_bentlage	Photosystem regulation in coral-associated dinoflagellates (Symbiodiniaceae) is the primary mode for seasonal acclimation	None	91	None	remote	Article	--
Haydon_et_al_2023	Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance	GBR	40	None	remote	Article	Data
Haydon_et_al_2021	Rapid shifts in bacterial communities and homogeneity of Symbiodiniaceae in colonies of Pocillopora acuta transplanted between reef and mangrove environments	GBR	33	None	remote	Article	Data
Terraneo_et_al_2023	From the shallow to the mesophotic: a characterization of Symbiodiniaceae diversity in the Red Sea NEOM region	Red Sea	50	None	remote	Article	Data
Lachs_et_al_2023	No apparent trade-offs associated with heat tolerance in a reef-building coral	Palau	51	None	remote	Article	Data

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